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Details
Link-It Detail - Jax Mouse Phenotype - abnormal substantia nigra morphology
Debug Stats
  • ### Total Build Time: 96 ms 18.674 KB
  • CONCEPT_NAME gt=7 ms Completed: 7 ms rowSize= 400 bytes
  • CONCEPT_SOLR_HIT_STATS gt=0 Completed: 0 ms rowSize= 14 bytes
  • CONCEPT_DEFINITION gt=0 Completed: 0 ms rowSize= 491 bytes
  • CONCEPT_SYNONYM gt=0 Completed: 0 ms rowSize= 189 bytes
  • Skipping details on: CONCEPT_TEXT gt=NONE 0 Completed: 0 ms rowSize= 0 bytes
  • CONCEPT_SEMANTIC_TYPE gt=1 ms Completed: 1 ms rowSize= 14 bytes
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  • CONCEPT_PARENTS gt=5 ms Completed: 5 ms rowSize= 1.029 KB
  • CONCEPT_CHILDREN gt=0 Completed: 0 ms rowSize= 8 bytes
  • CONCEPT_ANCESTRAL_ROOTS gt=4 ms Completed: 4 ms rowSize= 4.261 KB
  • CONCEPT_RELATIONSHIPS gt=0 Completed: 0 ms rowSize= 106 bytes
  • CONCEPT_GENES gt=74 ms Completed: 74 ms rowSize= 11.003 KB
  • CONCEPT_XREFS gt=4 ms Completed: 4 ms rowSize= 1.174 KB
  • CONCEPT_ANCILLARY gt=1 ms Completed: 1 ms rowSize= 14 bytes
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Jax Mouse Phenotype (1)
abnormal substantia nigra morphology MP:0000836
Definition (1)
any structural anomaly of the layer of grey substance that separates the posterior parts of the cerebral peduncles (tegmentum mesencephali) from the anterior parts; it normally includes a posterior compact part with many pigmented cells (pars compacta) and an anterior reticular part whose cells contain little pigment (pars reticularis)
Synonyms (1)
"abnormal locus niger morphology" EXACT
Parents (2)
img abnormal basal ganglion morphology MP:0006007
img abnormal midbrain morphology MP:0000897
Ancestral Roots
RootRoot Plus OneDepthParent
img mammalian phenotype MP:0000001img nervous system phenotype MP:00036317img abnormal basal ganglion morphology MP:0006007
img mammalian phenotype MP:0000001img nervous system phenotype MP:00036317img abnormal midbrain morphology MP:0000897
img mammalian phenotype MP:0000001img nervous system phenotype MP:00036316img abnormal midbrain morphology MP:0000897
Genes (18)

Species:
human : 18
SpeciesGeneGeneIdGene NameEvidence
HumanHIPK228996homeodomain interacting protein kinase 2
Click here to display 33 evidence detail records.
HumanATG710533autophagy related 7
Click here to display 33 evidence detail records.
HumanHYOU110525hypoxia up-regulated 1
Click here to display 33 evidence detail records.
HumanNR1H310062nuclear receptor subfamily 1, group H, member 3
Click here to display 33 evidence detail records.
HumanMFN29927mitofusin 2
Click here to display 33 evidence detail records.
HumanSPP16696secreted phosphoprotein 1
Click here to display 33 evidence detail records.
HumanPTEN5728phosphatase and tensin homolog
Click here to display 33 evidence detail records.
HumanPITX35309paired-like homeodomain 3
Click here to display 33 evidence detail records.
HumanPARK25071parkinson protein 2, E3 ubiquitin protein ligase (parkin)
Click here to display 33 evidence detail records.
HumanOTX15013orthodenticle homeobox 1
Click here to display 33 evidence detail records.
HumanNR4A24929nuclear receptor subfamily 4, group A, member 2
Click here to display 33 evidence detail records.
HumanKCNJ63763potassium inwardly-rectifying channel, subfamily J, member 6
Click here to display 33 evidence detail records.
HumanIL63569interleukin 6 (interferon, beta 2)
Click here to display 33 evidence detail records.
HumanGPR372861G protein-coupled receptor 37 (endothelin receptor type B-like)
Click here to display 33 evidence detail records.
HumanGDNF2668glial cell derived neurotrophic factor
Click here to display 33 evidence detail records.
HumanESR22100estrogen receptor 2 (ER beta)
Click here to display 33 evidence detail records.
HumanEN12019engrailed homeobox 1
Click here to display 33 evidence detail records.
HumanADH7131alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide
Click here to display 33 evidence detail records.
XRefs (1)

XRef Types:
mp : 1


ToppGene Datasets:
none : 1
ToppGene DatasetsXRef TypeXRef IdXRefValuesSourceTop % Rank
MPimg MP:0000836abnormal substantia nigra morphology0self