GATACA

Credits

Hide Credits

Data

Data - ToppGene Sources

The vast majority of all data in Gataca is from ToppGene so its credits cover data sources that are used within Gataca. The primary reason for utilizing the same sources between these applications is to help ensure consistancy between them. ToppGene, and Gataca, uses data from over 20 sources.

For ToppGene Credits, please visit:

ToppGene Links (Credits)

Data - GUDMAP

GUDMAP

The GUDMAP data within Gataca is only availble within the GUDMAP interface:

Gataca's GUDMAP

Data - UMLSKS

UMLSKS website

Software

Software - Solr

Solr website

Software - PrototypeJS

Prototype JS website

Prototype JavaScript framework, version 1.7
(c) 2005-2010 Sam Stephenson
 
Prototype is freely distributable under the terms of an MIT-style license.
For details, see the Prototype web site: http://www.prototypejs.org/

Software - script.aculo.us

Script.aculo.us website

NOTE: Only the effects.js and dragdrop.js modules from Script.aculo.us are being used.

// script.aculo.us scriptaculous.js v1.9.0, Thu Dec 23 16:54:48 -0500 2010

// Copyright (c) 2005-2010 Thomas Fuchs (http://script.aculo.us, http://mir.aculo.us)
//
// Permission is hereby granted, free of charge, to any person obtaining
// a copy of this software and associated documentation files (the
// "Software"), to deal in the Software without restriction, including
// without limitation the rights to use, copy, modify, merge, publish,
// distribute, sublicense, and/or sell copies of the Software, and to
// permit persons to whom the Software is furnished to do so, subject to
// the following conditions:
//
// The above copyright notice and this permission notice shall be
// included in all copies or substantial portions of the Software.
//
// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
// EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
// MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
// NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
// LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
// OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
// WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
//
// For details, see the script.aculo.us web site: http://script.aculo.us/

Software - canvasXpress

canvasXpress website

CanvasXpress is a javascript library based on the <canvas> tag implemented in HTML5.

This package is currently being used for the Venn Diagram within SetBuilder. Plans are to utilize it in other areas in the generation of other graphs.

Software - Oracle Enterprise Edition

Oracle website

The data within Gataca is being stored in an Oracle 11g database.

Software - Modernizr

modernizr

modernizr provides simple interfacing to check to see what features are available within the client's browser. This is predomantly used to test for HTML 5 features such as canvas or local storage support.

Software - JQTouch

JQTouch website

JQTouch is being used for the mobile edition of Gataca.

Software - jQuery

JQuery website

jQuery is used within JQTouch only.

Software - tablesort

tablesort website

Copyright (c) 2006 Andrew Tetlaw 
http://tetlaw.id.au/view/blog/table-sorting-with-prototype/

Permission is hereby granted, free of charge, to any person
obtaining a copy of this software and associated documentation
files (the "Software"), to deal in the Software without
restriction, including without limitation the rights to use, copy,
modify, merge, publish, distribute, sublicense, and/or sell copies
of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be
included in all copies or substantial portions of the Software.

Software - Firebug Light

Firebug Light website

firebugx.js - There is no disclaimer in the original file, but it is an open source project. The main website is http://www.getfirebug.com It is an open source project hosted by Google code.

Link-It Detail - Pathway - Genes involved in Activation of Kainate Receptors upon glutamate binding

Debug Stats

### Total Build Time: 36 ms 33.678 KB
CONCEPT_NAME gt=1 ms Completed: 1 ms rowSize= 284 bytes
CONCEPT_SOLR_HIT_STATS gt=0 Completed: 0 ms rowSize= 14 bytes
Skipping details on: CONCEPT_DEFINITION gt=NONE 0 Completed: 0 ms rowSize= 0 bytes
Skipping details on: CONCEPT_SYNONYM gt=NONE 0 Completed: 0 ms rowSize= 0 bytes
Skipping details on: CONCEPT_TEXT gt=NONE 0 Completed: 0 ms rowSize= 0 bytes
CONCEPT_SEMANTIC_TYPE gt=1 ms Completed: 1 ms rowSize= 14 bytes
Skipping details on: CONCEPT_NAMESPACE gt=NONE 0 Completed: 0 ms rowSize= 0 bytes
CONCEPT_PARENTS gt=0 Completed: 0 ms rowSize= 7 bytes
CONCEPT_CHILDREN gt=0 Completed: 0 ms rowSize= 8 bytes
CONCEPT_ANCESTRAL_ROOTS gt=0 Completed: 0 ms rowSize= 15 bytes
CONCEPT_RELATIONSHIPS gt=0 Completed: 0 ms rowSize= 106 bytes
CONCEPT_GENES gt=32 ms Completed: 32 ms rowSize= 32.043 KB
CONCEPT_XREFS gt=1 ms Completed: 1 ms rowSize= 1.184 KB
CONCEPT_ANCILLARY gt=1 ms Completed: 1 ms rowSize= 14 bytes
Reload Stats

Pathway (1)

Genes involved in Activation of Kainate Receptors upon glutamate binding reactome_activation_of_kainate_receptors_upon_glutamate_binding

Genes (32)

Species:

human : 32

Page Size

Current 25

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Current 1

Species	Gene	GeneId	Gene Name	Evidence
Human	GNG8	94235	guanine nucleotide binding protein (G protein), gamma 8	MSigDB: C2.cp - Reactome, UMLKSK CUI: C1426314 Genes involved in Activation of Kainate Receptors upon glutamate binding
Human	NCALD	83988	neurocalcin delta	MSigDB: C2.cp - Reactome, UMLKSK CUI: C1417604 Genes involved in Activation of Kainate Receptors upon glutamate binding
Human	GNB4	59345	guanine nucleotide binding protein (G protein), beta polypeptide 4	MSigDB: C2.cp - Reactome, UMLKSK CUI: C1427102 Genes involved in Activation of Kainate Receptors upon glutamate binding
Human	GNG12	55970	guanine nucleotide binding protein (G protein), gamma 12	MSigDB: C2.cp - Reactome, UMLKSK CUI: C1426313 Genes involved in Activation of Kainate Receptors upon glutamate binding
Human	GNG2	54331	guanine nucleotide binding protein (G protein), gamma 2	MSigDB: C2.cp - Reactome, UMLKSK CUI: C1415155 Genes involved in Activation of Kainate Receptors upon glutamate binding
Human	GNG13	51764	guanine nucleotide binding protein (G protein), gamma 13	MSigDB: C2.cp - Reactome, UMLKSK CUI: C1422425 Genes involved in Activation of Kainate Receptors upon glutamate binding
Human	PLCB1	23236	phospholipase C, beta 1 (phosphoinositide-specific)	MSigDB: C2.cp - Reactome, UMLKSK CUI: C1423830 Genes involved in Activation of Kainate Receptors upon glutamate binding
Human	GNB5	10681	guanine nucleotide binding protein (G protein), beta 5	MSigDB: C2.cp - Reactome, UMLKSK CUI: C1415152 Genes involved in Activation of Kainate Receptors upon glutamate binding
Human	PLCB3	5331	phospholipase C, beta 3 (phosphatidylinositol-specific)	MSigDB: C2.cp - Reactome, UMLKSK CUI: C1335225 Genes involved in Activation of Kainate Receptors upon glutamate binding
Human	PLCB2	5330	phospholipase C, beta 2	MSigDB: C2.cp - Reactome, UMLKSK CUI: C1418631 Genes involved in Activation of Kainate Receptors upon glutamate binding
Human	GRIK5	2901	glutamate receptor, ionotropic, kainate 5	MSigDB: C2.cp - Reactome, UMLKSK CUI: C1415297 Genes involved in Activation of Kainate Receptors upon glutamate binding
Human	GRIK4	2900	glutamate receptor, ionotropic, kainate 4	MSigDB: C2.cp - Reactome, UMLKSK CUI: C1415296 Genes involved in Activation of Kainate Receptors upon glutamate binding
Human	GRIK3	2899	glutamate receptor, ionotropic, kainate 3	MSigDB: C2.cp - Reactome, UMLKSK CUI: C1415295 Genes involved in Activation of Kainate Receptors upon glutamate binding
Human	GRIK2	2898	glutamate receptor, ionotropic, kainate 2	MSigDB: C2.cp - Reactome, UMLKSK CUI: C1415294 Genes involved in Activation of Kainate Receptors upon glutamate binding
Human	GRIK1	2897	glutamate receptor, ionotropic, kainate 1	MSigDB: C2.cp - Reactome, UMLKSK CUI: C1415293 Genes involved in Activation of Kainate Receptors upon glutamate binding
Human	GNGT2	2793	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	MSigDB: C2.cp - Reactome, UMLKSK CUI: C1415162 Genes involved in Activation of Kainate Receptors upon glutamate binding
Human	GNGT1	2792	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1	MSigDB: C2.cp - Reactome, UMLKSK CUI: C1415161 Genes involved in Activation of Kainate Receptors upon glutamate binding
Human	GNG11	2791	guanine nucleotide binding protein (G protein), gamma 11	MSigDB: C2.cp - Reactome, UMLKSK CUI: C1415154 Genes involved in Activation of Kainate Receptors upon glutamate binding
Human	GNG10	2790	guanine nucleotide binding protein (G protein), gamma 10	MSigDB: C2.cp - Reactome, UMLKSK CUI: C1415153 Genes involved in Activation of Kainate Receptors upon glutamate binding
Human	GNG7	2788	guanine nucleotide binding protein (G protein), gamma 7	MSigDB: C2.cp - Reactome, UMLKSK CUI: C1415160 Genes involved in Activation of Kainate Receptors upon glutamate binding
Human	GNG5	2787	guanine nucleotide binding protein (G protein), gamma 5	MSigDB: C2.cp - Reactome, UMLKSK CUI: C1415158 Genes involved in Activation of Kainate Receptors upon glutamate binding
Human	GNG4	2786	guanine nucleotide binding protein (G protein), gamma 4	MSigDB: C2.cp - Reactome, UMLKSK CUI: C1415157 Genes involved in Activation of Kainate Receptors upon glutamate binding
Human	GNG3	2785	guanine nucleotide binding protein (G protein), gamma 3	MSigDB: C2.cp - Reactome, UMLKSK CUI: C1415156 Genes involved in Activation of Kainate Receptors upon glutamate binding
Human	GNB3	2784	guanine nucleotide binding protein (G protein), beta polypeptide 3	MSigDB: C2.cp - Reactome, UMLKSK CUI: C1333689 Genes involved in Activation of Kainate Receptors upon glutamate binding
Human	GNB2	2783	guanine nucleotide binding protein (G protein), beta polypeptide 2	MSigDB: C2.cp - Reactome, UMLKSK CUI: C1333688 Genes involved in Activation of Kainate Receptors upon glutamate binding

XRefs (1)

XRef Types:

pathway : 1

ToppGene Datasets:

none : 1

ToppGene Datasets	XRef Type	XRef Id	XRef	Values	Source	Top % Rank
	PATHWAY	reactome_activation_of_kainate_receptors_upon_glutamate_binding	Genes involved in Activation of Kainate Receptors upon glutamate binding	0		self

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