Logo arc image image
GATACA
  • Pin/Unpin Search
  • Pin/Unpin Details
Status:
Global Actions
Concepts: 0 (0)   Selected: 0 (0
Clear All Selections
 
Search
Text Search Results
Text Search Query:
none
Text Search Options:
none

Guided Help

Text Search Results
GraphTree Minimize or Maximize this Category
 Disease: 0
No results.
 Concepts (w/Genes): 0 (0)   Selected (w/genes): 0 (0)
GraphTree Minimize or Maximize this Category
 Anatomy: 0
No results.
 Concepts (w/Genes): 0 (0)   Selected (w/genes): 0 (0)
Minimize or Maximize this Category
 Gene: 0
No results.
 Concepts (w/Genes): 0 (0)   Selected (w/genes): 0 (0)
GraphTree Minimize or Maximize this Category
 Jax Mouse Phenotype: 0
No results.
 Concepts (w/Genes): 0 (0)   Selected (w/genes): 0 (0)
GraphTree Minimize or Maximize this Category
 Human Phenotype: 0
No results.
 Concepts (w/Genes): 0 (0)   Selected (w/genes): 0 (0)
GraphTree Minimize or Maximize this Category
 Gene Ontology: Biological Processes: 0
No results.
 Concepts (w/Genes): 0 (0)   Selected (w/genes): 0 (0)
GraphTree Minimize or Maximize this Category
 Gene Ontology: Cellular Component: 0
No results.
 Concepts (w/Genes): 0 (0)   Selected (w/genes): 0 (0)
GraphTree Minimize or Maximize this Category
 Gene Ontology: Molecular Function: 0
No results.
 Concepts (w/Genes): 0 (0)   Selected (w/genes): 0 (0)
Minimize or Maximize this Category
 Pathway: 0
No results.
 Concepts (w/Genes): 0 (0)   Selected (w/genes): 0 (0)
GraphTree Minimize or Maximize this Category
 Drug: 0
No results.
 Concepts (w/Genes): 0 (0)   Selected (w/genes): 0 (0)
Minimize or Maximize this Category
 Genomic Expression Atlas --
      Microarray Datasets: 0
No results.
 Concepts (w/Genes): 0 (0)   Selected (w/genes): 0 (0)
Minimize or Maximize this Category
 PubMed: 0
No results.
 Concepts (w/Genes): 0 (0)   Selected (w/genes): 0 (0)
GraphTree Minimize or Maximize this Category
 CoExpression Atlas: 0
No results.
 Concepts (w/Genes): 0 (0)   Selected (w/genes): 0 (0)
Minimize or Maximize this Category
 CoExpression: 0
No results.
 Concepts (w/Genes): 0 (0)   Selected (w/genes): 0 (0)
Minimize or Maximize this Category
 Interactions: 0
No results.
 Concepts (w/Genes): 0 (0)   Selected (w/genes): 0 (0)
Details
Link-It Detail - CoExpression Atlas - Cluster 2: ECM related genes up-regulated in dermal fibroblasts within 30 min after TGFB1 [Gene ID=7040] addition; reached a plateau after that.
Debug Stats
  • ### Total Build Time: 37 ms 16.134 KB
  • CONCEPT_NAME gt=1 ms Completed: 1 ms rowSize= 346 bytes
  • CONCEPT_SOLR_HIT_STATS gt=0 Completed: 0 ms rowSize= 14 bytes
  • Skipping details on: CONCEPT_DEFINITION gt=NONE 0 Completed: 0 ms rowSize= 0 bytes
  • Skipping details on: CONCEPT_SYNONYM gt=NONE 0 Completed: 0 ms rowSize= 0 bytes
  • Skipping details on: CONCEPT_TEXT gt=NONE 0 Completed: 0 ms rowSize= 0 bytes
  • CONCEPT_SEMANTIC_TYPE gt=1 ms Completed: 1 ms rowSize= 14 bytes
  • Skipping details on: CONCEPT_NAMESPACE gt=NONE 0 Completed: 0 ms rowSize= 0 bytes
  • CONCEPT_PARENTS gt=6 ms Completed: 6 ms rowSize= 540 bytes
  • CONCEPT_CHILDREN gt=0 Completed: 0 ms rowSize= 8 bytes
  • CONCEPT_ANCESTRAL_ROOTS gt=0 Completed: 0 ms rowSize= 1.329 KB
  • CONCEPT_RELATIONSHIPS gt=1 ms Completed: 1 ms rowSize= 106 bytes
  • CONCEPT_GENES gt=26 ms Completed: 26 ms rowSize= 12.587 KB
  • CONCEPT_XREFS gt=1 ms Completed: 1 ms rowSize= 1.200 KB
  • CONCEPT_ANCILLARY gt=1 ms Completed: 1 ms rowSize= 14 bytes
  • Reload Stats
CoExpression Atlas (1)
Cluster 2: ECM related genes up-regulated in dermal fibroblasts within 30 min after TGFB1 [Gene ID=7040] addition; reached a plateau after that. verrecchia_response_to_tgfb1_c2
Parents (1)
img coexpressionatlas_verrecchia_response_to_tgfb1 verrecchia_response_to_tgfb1
Ancestral Roots
RootRoot Plus OneDepthParent
img coexpressionatlas_verrecchia verrecchiaimg coexpressionatlas_verrecchia_response verrecchia_response5img coexpressionatlas_verrecchia_response_to_tgfb1 verrecchia_response_to_tgfb1
Genes (19)

Species:
human : 19
SpeciesGeneGeneIdGene NameEvidence
HumanMARCKSL165108MARCKS-like 1
MSigDB: C2.cgp, coexpatlas Id: verrecchia_response_to_tgfb1_c2
HumanTIMP17076TIMP metallopeptidase inhibitor 1
MSigDB: C2.cgp, coexpatlas Id: verrecchia_response_to_tgfb1_c2
HumanPCDHGC35098protocadherin gamma subfamily C, 3
MSigDB: C2.cgp, coexpatlas Id: verrecchia_response_to_tgfb1_c2
HumanMMP144323matrix metallopeptidase 14 (membrane-inserted)
MSigDB: C2.cgp, coexpatlas Id: verrecchia_response_to_tgfb1_c2
HumanMMP34314matrix metallopeptidase 3 (stromelysin 1, progelatinase)
MSigDB: C2.cgp, coexpatlas Id: verrecchia_response_to_tgfb1_c2
HumanLRP14035low density lipoprotein receptor-related protein 1
MSigDB: C2.cgp, coexpatlas Id: verrecchia_response_to_tgfb1_c2
HumanJUP3728junction plakoglobin
MSigDB: C2.cgp, coexpatlas Id: verrecchia_response_to_tgfb1_c2
HumanITGB23689integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)
MSigDB: C2.cgp, coexpatlas Id: verrecchia_response_to_tgfb1_c2
HumanICAM13383intercellular adhesion molecule 1
MSigDB: C2.cgp, coexpatlas Id: verrecchia_response_to_tgfb1_c2
HumanFN12335fibronectin 1
MSigDB: C2.cgp, coexpatlas Id: verrecchia_response_to_tgfb1_c2
HumanDVL11855dishevelled segment polarity protein 1
MSigDB: C2.cgp, coexpatlas Id: verrecchia_response_to_tgfb1_c2
HumanCOL6A31293collagen, type VI, alpha 3
MSigDB: C2.cgp, coexpatlas Id: verrecchia_response_to_tgfb1_c2
HumanCOL6A11291collagen, type VI, alpha 1
MSigDB: C2.cgp, coexpatlas Id: verrecchia_response_to_tgfb1_c2
HumanCOL3A11281collagen, type III, alpha 1
MSigDB: C2.cgp, coexpatlas Id: verrecchia_response_to_tgfb1_c2
HumanCOL1A21278collagen, type I, alpha 2
MSigDB: C2.cgp, coexpatlas Id: verrecchia_response_to_tgfb1_c2
HumanCDH61004cadherin 6, type 2, K-cadherin (fetal kidney)
MSigDB: C2.cgp, coexpatlas Id: verrecchia_response_to_tgfb1_c2
HumanARHGDIA396Rho GDP dissociation inhibitor (GDI) alpha
MSigDB: C2.cgp, coexpatlas Id: verrecchia_response_to_tgfb1_c2
HumanRHOG391ras homolog family member G
MSigDB: C2.cgp, coexpatlas Id: verrecchia_response_to_tgfb1_c2
HumanRHOC389ras homolog family member C
MSigDB: C2.cgp, coexpatlas Id: verrecchia_response_to_tgfb1_c2
XRefs (1)

XRef Types:
coexpatlas : 1


ToppGene Datasets:
none : 1
ToppGene DatasetsXRef TypeXRef IdXRefValuesSourceTop % Rank
coexpatlasimg verrecchia_response_to_tgfb1_c2Cluster 2: ECM related genes up-regulated in dermal fibroblasts within 30 min after TGFB1 [Gene ID=7040] addition; reached a plateau after that.0self