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Details
Link-It Detail - CoExpression Atlas - Cluster 5: selected 17q21_23 amplicon genes clustered together across breast cancer samples.
Debug Stats
  • ### Total Build Time: 30 ms 15.869 KB
  • CONCEPT_NAME gt=1 ms Completed: 1 ms rowSize= 293 bytes
  • CONCEPT_SOLR_HIT_STATS gt=0 Completed: 0 ms rowSize= 14 bytes
  • Skipping details on: CONCEPT_DEFINITION gt=NONE 0 Completed: 0 ms rowSize= 0 bytes
  • Skipping details on: CONCEPT_SYNONYM gt=NONE 0 Completed: 0 ms rowSize= 0 bytes
  • Skipping details on: CONCEPT_TEXT gt=NONE 0 Completed: 0 ms rowSize= 0 bytes
  • CONCEPT_SEMANTIC_TYPE gt=0 Completed: 0 ms rowSize= 14 bytes
  • Skipping details on: CONCEPT_NAMESPACE gt=NONE 0 Completed: 0 ms rowSize= 0 bytes
  • CONCEPT_PARENTS gt=4 ms Completed: 4 ms rowSize= 540 bytes
  • CONCEPT_CHILDREN gt=0 Completed: 0 ms rowSize= 8 bytes
  • CONCEPT_ANCESTRAL_ROOTS gt=1 ms Completed: 1 ms rowSize= 1.280 KB
  • CONCEPT_RELATIONSHIPS gt=0 Completed: 0 ms rowSize= 106 bytes
  • CONCEPT_GENES gt=23 ms Completed: 23 ms rowSize= 12.476 KB
  • CONCEPT_XREFS gt=1 ms Completed: 1 ms rowSize= 1.147 KB
  • CONCEPT_ANCILLARY gt=0 Completed: 0 ms rowSize= 14 bytes
  • Reload Stats
CoExpression Atlas (1)
Cluster 5: selected 17q21_23 amplicon genes clustered together across breast cancer samples. farmer_breast_cancer_cluster_5
Parents (1)
img coexpressionatlas_farmer_breast_cancer_cluster farmer_breast_cancer_cluster
Ancestral Roots
RootRoot Plus OneDepthParent
img coexpressionatlas_farmer farmerimg coexpressionatlas_farmer_breast farmer_breast5img coexpressionatlas_farmer_breast_cancer_cluster farmer_breast_cancer_cluster
Genes (19)

Species:
human : 19
SpeciesGeneGeneIdGene NameEvidence
HumanDACT151339dishevelled-binding antagonist of beta-catenin 1
MSigDB: C2.cgp, coexpatlas Id: farmer_breast_cancer_cluster_5
HumanSRPX227286sushi-repeat containing protein, X-linked 2
MSigDB: C2.cgp, coexpatlas Id: farmer_breast_cancer_cluster_5
HumanNID222795nidogen 2 (osteonidogen)
MSigDB: C2.cgp, coexpatlas Id: farmer_breast_cancer_cluster_5
HumanFILIP1L11259filamin A interacting protein 1-like
MSigDB: C2.cgp, coexpatlas Id: farmer_breast_cancer_cluster_5
HumanADAM128038ADAM metallopeptidase domain 12
MSigDB: C2.cgp, coexpatlas Id: farmer_breast_cancer_cluster_5
HumanTHBS27058thrombospondin 2
MSigDB: C2.cgp, coexpatlas Id: farmer_breast_cancer_cluster_5
HumanSPARC6678secreted protein, acidic, cysteine-rich (osteonectin)
MSigDB: C2.cgp, coexpatlas Id: farmer_breast_cancer_cluster_5
HumanHTRA15654HtrA serine peptidase 1
MSigDB: C2.cgp, coexpatlas Id: farmer_breast_cancer_cluster_5
HumanSERPINF15176serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1
MSigDB: C2.cgp, coexpatlas Id: farmer_breast_cancer_cluster_5
HumanPCOLCE5118procollagen C-endopeptidase enhancer
MSigDB: C2.cgp, coexpatlas Id: farmer_breast_cancer_cluster_5
HumanFBN12200fibrillin 1
MSigDB: C2.cgp, coexpatlas Id: farmer_breast_cancer_cluster_5
HumanFAP2191fibroblast activation protein, alpha
MSigDB: C2.cgp, coexpatlas Id: farmer_breast_cancer_cluster_5
HumanCTSK1513cathepsin K
MSigDB: C2.cgp, coexpatlas Id: farmer_breast_cancer_cluster_5
HumanCOL5A21290collagen, type V, alpha 2
MSigDB: C2.cgp, coexpatlas Id: farmer_breast_cancer_cluster_5
HumanCOL5A11289collagen, type V, alpha 1
MSigDB: C2.cgp, coexpatlas Id: farmer_breast_cancer_cluster_5
HumanCOL3A11281collagen, type III, alpha 1
MSigDB: C2.cgp, coexpatlas Id: farmer_breast_cancer_cluster_5
HumanCOL1A21278collagen, type I, alpha 2
MSigDB: C2.cgp, coexpatlas Id: farmer_breast_cancer_cluster_5
HumanCDH111009cadherin 11, type 2, OB-cadherin (osteoblast)
MSigDB: C2.cgp, coexpatlas Id: farmer_breast_cancer_cluster_5
HumanAEBP1165AE binding protein 1
MSigDB: C2.cgp, coexpatlas Id: farmer_breast_cancer_cluster_5
XRefs (1)

XRef Types:
coexpatlas : 1


ToppGene Datasets:
none : 1
ToppGene DatasetsXRef TypeXRef IdXRefValuesSourceTop % Rank
coexpatlasimg farmer_breast_cancer_cluster_5Cluster 5: selected 17q21_23 amplicon genes clustered together across breast cancer samples.0self