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Details
Link-It Detail - CoExpression Atlas - Cluster 1: genes up-regulated by RB1 [Gene ID=5925], CDNK2A [Gene ID=1029], and one of the E2Fs (E2F1, E2F2, or E2F3 [Gene ID=1869, 1870, 1871]).
Debug Stats
  • ### Total Build Time: 63 ms 22.317 KB
  • CONCEPT_NAME gt=1 ms Completed: 1 ms rowSize= 349 bytes
  • CONCEPT_SOLR_HIT_STATS gt=0 Completed: 0 ms rowSize= 14 bytes
  • Skipping details on: CONCEPT_DEFINITION gt=NONE 0 Completed: 0 ms rowSize= 0 bytes
  • Skipping details on: CONCEPT_SYNONYM gt=NONE 0 Completed: 0 ms rowSize= 0 bytes
  • Skipping details on: CONCEPT_TEXT gt=NONE 0 Completed: 0 ms rowSize= 0 bytes
  • CONCEPT_SEMANTIC_TYPE gt=1 ms Completed: 1 ms rowSize= 14 bytes
  • Skipping details on: CONCEPT_NAMESPACE gt=NONE 0 Completed: 0 ms rowSize= 0 bytes
  • CONCEPT_PARENTS gt=16 ms Completed: 16 ms rowSize= 550 bytes
  • CONCEPT_CHILDREN gt=0 Completed: 0 ms rowSize= 8 bytes
  • CONCEPT_ANCESTRAL_ROOTS gt=0 Completed: 0 ms rowSize= 1.339 KB
  • CONCEPT_RELATIONSHIPS gt=1 ms Completed: 1 ms rowSize= 106 bytes
  • CONCEPT_GENES gt=42 ms Completed: 42 ms rowSize= 18.743 KB
  • CONCEPT_XREFS gt=1 ms Completed: 1 ms rowSize= 1.205 KB
  • CONCEPT_ANCILLARY gt=1 ms Completed: 1 ms rowSize= 14 bytes
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CoExpression Atlas (1)
Cluster 1: genes up-regulated by RB1 [Gene ID=5925], CDNK2A [Gene ID=1029], and one of the E2Fs (E2F1, E2F2, or E2F3 [Gene ID=1869, 1870, 1871]). vernell_retinoblastoma_pathway_up
Parents (1)
img coexpressionatlas_vernell_retinoblastoma_pathway vernell_retinoblastoma_pathway
Ancestral Roots
RootRoot Plus OneDepthParent
img coexpressionatlas_vernell vernellimg coexpressionatlas_vernell_retinoblastoma vernell_retinoblastoma4img coexpressionatlas_vernell_retinoblastoma_pathway vernell_retinoblastoma_pathway
Genes (39)

Species:
human : 39
Page Size
Current 25
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Current 1
SpeciesGeneGeneIdGene NameEvidence
HumanFANCL55120Fanconi anemia, complementation group L
MSigDB: C2.cgp, coexpatlas Id: vernell_retinoblastoma_pathway_up
HumanTMEM9727346transmembrane protein 97
MSigDB: C2.cgp, coexpatlas Id: vernell_retinoblastoma_pathway_up
HumanSUZ1223512SUZ12 polycomb repressive complex 2 subunit
MSigDB: C2.cgp, coexpatlas Id: vernell_retinoblastoma_pathway_up
HumanBTG310950BTG family, member 3
MSigDB: C2.cgp, coexpatlas Id: vernell_retinoblastoma_pathway_up
HumanPOLD310714polymerase (DNA-directed), delta 3, accessory subunit
MSigDB: C2.cgp, coexpatlas Id: vernell_retinoblastoma_pathway_up
HumanFST10468follistatin
MSigDB: C2.cgp, coexpatlas Id: vernell_retinoblastoma_pathway_up
HumanCHAF1A10036chromatin assembly factor 1, subunit A (p150)
MSigDB: C2.cgp, coexpatlas Id: vernell_retinoblastoma_pathway_up
HumanMELK9833maternal embryonic leucine zipper kinase
MSigDB: C2.cgp, coexpatlas Id: vernell_retinoblastoma_pathway_up
HumanEED8726embryonic ectoderm development
MSigDB: C2.cgp, coexpatlas Id: vernell_retinoblastoma_pathway_up
HumanDEK7913DEK oncogene
MSigDB: C2.cgp, coexpatlas Id: vernell_retinoblastoma_pathway_up
HumanSLBP7884stem-loop binding protein
MSigDB: C2.cgp, coexpatlas Id: vernell_retinoblastoma_pathway_up
HumanVRK17443vaccinia related kinase 1
MSigDB: C2.cgp, coexpatlas Id: vernell_retinoblastoma_pathway_up
HumanTMPO7112thymopoietin
MSigDB: C2.cgp, coexpatlas Id: vernell_retinoblastoma_pathway_up
HumanTFDP17027transcription factor Dp-1
MSigDB: C2.cgp, coexpatlas Id: vernell_retinoblastoma_pathway_up
HumanSNTB26645syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)
MSigDB: C2.cgp, coexpatlas Id: vernell_retinoblastoma_pathway_up
HumanSKP26502S-phase kinase-associated protein 2, E3 ubiquitin protein ligase
MSigDB: C2.cgp, coexpatlas Id: vernell_retinoblastoma_pathway_up
HumanRRM26241ribonucleotide reductase M2
MSigDB: C2.cgp, coexpatlas Id: vernell_retinoblastoma_pathway_up
HumanRRM16240ribonucleotide reductase M1
MSigDB: C2.cgp, coexpatlas Id: vernell_retinoblastoma_pathway_up
HumanRFC45984replication factor C (activator 1) 4, 37kDa
MSigDB: C2.cgp, coexpatlas Id: vernell_retinoblastoma_pathway_up
HumanRFC35983replication factor C (activator 1) 3, 38kDa
MSigDB: C2.cgp, coexpatlas Id: vernell_retinoblastoma_pathway_up
HumanRAB27A5873RAB27A, member RAS oncogene family
MSigDB: C2.cgp, coexpatlas Id: vernell_retinoblastoma_pathway_up
HumanPTX35806pentraxin 3, long
MSigDB: C2.cgp, coexpatlas Id: vernell_retinoblastoma_pathway_up
HumanPCNA5111proliferating cell nuclear antigen
MSigDB: C2.cgp, coexpatlas Id: vernell_retinoblastoma_pathway_up
HumanPBX35090pre-B-cell leukemia homeobox 3
MSigDB: C2.cgp, coexpatlas Id: vernell_retinoblastoma_pathway_up
HumanNPAT4863nuclear protein, ataxia-telangiectasia locus
MSigDB: C2.cgp, coexpatlas Id: vernell_retinoblastoma_pathway_up
XRefs (1)

XRef Types:
coexpatlas : 1


ToppGene Datasets:
none : 1
ToppGene DatasetsXRef TypeXRef IdXRefValuesSourceTop % Rank
coexpatlasimg vernell_retinoblastoma_pathway_upCluster 1: genes up-regulated by RB1 [Gene ID=5925], CDNK2A [Gene ID=1029], and one of the E2Fs (E2F1, E2F2, or E2F3 [Gene ID=1869, 1870, 1871]).0self